RnoEX0007822 @ rn6
Exon Skipping
Gene
ENSRNOG00000000439 | Ager
Description
advanced glycosylation end product-specific receptor [Source:RGD Symbol;Acc:69258]
Coordinates
chr20:4364713-4365494:+
Coord C1 exon
chr20:4364713-4364843
Coord A exon
chr20:4365011-4365152
Coord C2 exon
chr20:4365468-4365494
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCCCCTTTCCATCAGGGC
3' ss Score
10.53
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
AGCCCCTGCCTCCAGAGGGCATTCAGCTGTTGGTTGAGCCTGAAGGTGGAACAGTCGCTCCTGGTGGGACCGTGACCCTGACCTGTGCCATCTCTGCCCAGCCTCCCCCTCAAATCCACTGGATAAAAGAT
Seq A exon
GGCACACCCCTGCCCCTTGCCCCCAGCCCTGTGCTGCTCCTCCCTGAGGTAGGGCATGAGGATGAGGGCATCTACAGCTGCGTGGCCACCCACCCTAGCCATGGACCTCAGGAAAGCCCTCCTGTCAACATCAGGGTCACAG
Seq C2 exon
AAACCGGTGATGAAGGACAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000439-'10-16,'10-12,13-16
Average complexity
C1
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=0.652 C2=1.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(43.4=81.8)
A:
PF138951=Ig_2=PD(54.2=93.8),PF0240410=SCF=PU(13.5=25.0)
C2:
PF0240410=SCF=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGGCATTCAGCTGTTG
R:
TGCAGCTTGTCCTTCATCACC
Band lengths:
146-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]