BtaEX0002798 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014420 | AGER
Description
Bos taurus advanced glycosylation end product-specific receptor (AGER), mRNA. [Source:RefSeq mRNA;Acc:NM_173982]
Coordinates
chr23:27010580-27011309:+
Coord C1 exon
chr23:27010580-27010710
Coord A exon
chr23:27010895-27011036
Coord C2 exon
chr23:27011283-27011309
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATCCCTCCTTCCCCCACCAGGGC
3' ss Score
11.1
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
ACGCTGTGCCACTGAAGGAAGTCCAGTTGGTGGTAGAGCCAGAAGGGGGAGCAGTAGCTCCTGGTGGTACTGTGACCTTGACCTGTGAAGCCCCCGCCCAGCCCCCACCTCAAATCCACTGGATCAAGGAT
Seq A exon
GGCAGGCCCCTGCCCCTTCCCCCTGGCCCCATGCTGCTCCTCCCAGAGGTAGGGCCTGAGGACCAGGGAACCTACAGTTGTGTGGCCACCCATCCCAGCCATGGGCCCCAGGAGAGCCGTGCTGTCAGCGTCAGCATCATCG
Seq C2 exon
AAACAGGCGAGGAGGGGACGACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014420_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=0.896 C2=0.759
Domain overlap (PFAM):
C1:
PF082057=C2-set_2=PD(2.4=6.7)
A:
PF138951=Ig_2=PD(53.6=93.8)
C2:
PF138951=Ig_2=FE(16.3=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCACTGAAGGAAGTCC
R:
CTGCAGTCGTCCCCTCCTC
Band lengths:
155-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development