HsaEX0004558 @ hg19
Exon Skipping
Gene
ENSG00000106013 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:18588]
Coordinates
chr7:117874485-117876201:+
Coord C1 exon
chr7:117874485-117874599
Coord A exon
chr7:117874755-117874928
Coord C2 exon
chr7:117876095-117876201
Length
174 bp
Sequences
Splice sites
3' ss Seq
TACTCTTGTTGCATTAACAGGCA
3' ss Score
6.64
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
AACACCTTTGCACCTAGCCTGTGCTAATGGACATACAGATGTTGTACTTTTCCTAATTGAGCAACAATGCAAAATAAATGTCCGGGATAGTGAAAACAAATCCCCATTGATTAAG
Seq A exon
GCAGTACAGTGTCAAAATGAGGATTGTGCTACTATTCTTCTAAACTTTGGTGCAGACCCAGATCTGAGGGATATTCGTTATAATACTGTTCTTCACTATGCTGTTTGTGGTCAAAGTTTGTCATTAGTTGAAAAACTGCTTGAATACGAAGCTGATCTTGAAGCGAAAAATAAG
Seq C2 exon
GATGGGTATACTCCACTATTAGTTGCCGTTATTAACAATAATCCAAAAATGGTAAAATTTCTTCTGGAGAAAGGGGCTGATGTGAATGCTTCAGATAATTATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106013_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF074556=Psu=PD(10.2=36.0),PF038638=Phage_mat-A=PD(0.1=0.0),PF127962=Ank_2=FE(31.2=100)
A:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(50.0=56.9)
C2:
PF127962=Ank_2=PD(47.0=86.1),PF0002325=Ank=PU(6.2=5.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTTTGCACCTAGCCTG
R:
TCTGAAGCATTCACATCAGCCC
Band lengths:
210-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)