MmuEX6003089 @ mm9
Exon Skipping
Gene
ENSMUSG00000029517 | Ankrd7
Description
ankyrin repeat domain 7 [Source:MGI Symbol;Acc:MGI:1922446]
Coordinates
chr6:18817982-18819339:+
Coord C1 exon
chr6:18817982-18818096
Coord A exon
chr6:18818244-18818417
Coord C2 exon
chr6:18819233-18819339
Length
174 bp
Sequences
Splice sites
3' ss Seq
TATTCTTGTTCCACTAGCAGGCA
3' ss Score
5.62
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AACACCTTTGCATTTGGCCTGTGCTAATGGATATACAAATATTGTCTCTCTCTTAATTGAGAATCAATGCAAAATTAATGTCCAGGATAGTGAAAACAGAACCCCATTGATTAAG
Seq A exon
GCAGTAGAGTGTCAACAGGAGAGTTGTGCTACGGTTCTTCTTCTTCATGGTGCAGATCCAAATCTGGTAGATGTTTATAGTAATACGGCTCTCCATTATGCTGTTTGTGGCCAAAATATTTCATTAGCCAATAAATTGCTTCAATATAAAGCCAATCTTGAAGCCAAAAATAAG
Seq C2 exon
GACGGTCACACTCCGCTTTTACTTGCTGTTGCTGAAAATAATGAAAATATGGTAAAATTCCTTCTGAAGAAAGGAGCAGATGTAAATGCATCAGATAAAAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029517-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PD(68.5=94.9),PF127962=Ank_2=PU(1.1=2.6)
A:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.2=62.1)
C2:
PF127962=Ank_2=PD(44.9=86.1),PF127962=Ank_2=PU(10.8=19.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTTGCATTTGGCCTGTG
R:
TGTGGTTTTTATCTGATGCATTTACA
Band lengths:
219-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: