HsaEX0004558 @ hg38
Exon Skipping
Gene
ENSG00000106013 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr7:118234431-118236147:+
Coord C1 exon
chr7:118234431-118234545
Coord A exon
chr7:118234701-118234874
Coord C2 exon
chr7:118236041-118236147
Length
174 bp
Sequences
Splice sites
3' ss Seq
TACTCTTGTTGCATTAACAGGCA
3' ss Score
6.64
5' ss Seq
AAGGTAGTT
5' ss Score
6.44
Exon sequences
Seq C1 exon
AACACCTTTGCACCTAGCCTGTGCTAATGGACATACAGATGTTGTACTTTTCCTAATTGAGCAACAATGCAAAATAAATGTCCGGGATAGTGAAAACAAATCCCCATTGATTAAG
Seq A exon
GCAGTACAGTGTCAAAATGAGGATTGTGCTACTATTCTTCTAAACTTTGGTGCAGACCCAGATCTGAGGGATATTCGTTATAATACTGTTCTTCACTATGCTGTTTGTGGTCAAAGTTTGTCATTAGTTGAAAAACTGCTTGAATACGAAGCTGATCTTGAAGCGAAAAATAAG
Seq C2 exon
GATGGGTATACTCCACTATTAGTTGCCGTTATTAACAATAATCCAAAAATGGTAAAATTTCTTCTGGAGAAAGGGGCTGATGTGAATGCTTCAGATAATTATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106013_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(50.0=56.9)
C2:
PF127962=Ank_2=PD(47.0=86.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTTTGCACCTAGCCTG
R:
TCTGAAGCATTCACATCAGCCC
Band lengths:
210-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development