RnoEX6012796 @ rn6
Exon Skipping
Gene
ENSRNOG00000055481 | Ankrd7
Description
ankyrin repeat domain 7 [Source:RGD Symbol;Acc:1564660]
Coordinates
chr4:45568910-45570264:+
Coord C1 exon
chr4:45568910-45569024
Coord A exon
chr4:45569181-45569354
Coord C2 exon
chr4:45570158-45570264
Length
174 bp
Sequences
Splice sites
3' ss Seq
TACTCTTCTTCCACTAGCAGGCA
3' ss Score
6.27
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AACACCTTTGCATTTCGCCTGTGCTAACGGATATACAAACATTGTCTCTCTCTTAATTGAGAATCAATGCAAAATTAATGTCCAGGATAGTGAAAACAGAACCCCATTGATTAAG
Seq A exon
GCAGCAGAGTGTCAACAGGAGAGTTGTGCTACTCTTCTTCTACACCATGGTGCAGATCCAAATCTGGGAGATATTTATGGTAATACTGCTCTCCATTATGCTGTTTATGGCCAAAATATCTCATTAGCCAATAAATTGCTTGACTACAAAGCCAATCTTGAAGCCAAAAATAAG
Seq C2 exon
GATGGCTACACCCCGCTTTTACTTGCTGTTGCTGAAAATAATGAAAATATGGTAAAATTCCTTCTGAAGAAAGGAGCCGATGTAAATGCATCAGATAAAAACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055481-'1-3,'1-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(40.4=100)
A:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.9=63.8)
C2:
PF127962=Ank_2=PD(44.3=86.1),PF127962=Ank_2=PU(9.0=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTTGCATTTCGCCTGTG
R:
TGTGGTTTTTATCTGATGCATTTACA
Band lengths:
219-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]