HsaEX0012351 @ hg38
Exon Skipping
Gene
ENSG00000182472 | CAPN12
Description
calpain 12 [Source:HGNC Symbol;Acc:HGNC:13249]
Coordinates
chr19:38730559-38731223:-
Coord C1 exon
chr19:38731107-38731223
Coord A exon
chr19:38730965-38731023
Coord C2 exon
chr19:38730559-38730878
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCCTGCCCCTCTCTGCACAGGCC
3' ss Score
11.33
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTTCCACCTGAACAACCAGCTGACCCAGACCCTCACCAGCCGCTACCGGGATAGCCGTCTGCGTGTGGACTTCGAGCGGTTCGTGTCCTGTGTGGCCCACCTCACCTGCATCTTCT
Seq A exon
GCCACTGCAGCCAGCACCTGGATGGGGGTGAGGGGGTCATCTGCCTGACCCACAGACAG
Seq C2 exon
TGGATGGAGGTGGCCACCTTCTCCTAGGATCTCCGGATGGGCGCACCTGCTGCTCAGGGCAGGGTTGCTGAGCAAGACCACCTCCCTAGGCCTTGCCTGGCATGGGTGCCACTCTCTCTGGCATCCACCTGTCTGGGGCTAGTCTCTGGCCCTCACTGCTCACGGCCGGGTGACCACTCTGGCCTGCGTACTCCTCACTCAGAAACAAGAACAGCGACAGCCCTTCTCGAGCAGATGACACGAGCTAGTCCACGTTGACAGCTTAAGACAGTGCTAGCTCTGCCCTGGCTCTCCTAGAAGGTGGAGGACAGACACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182472_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(46.3=77.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACCAGCTGACCCAGAC
R:
ATCCTAGGAGAAGGTGGCCAC
Band lengths:
137-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development