BtaEX6082185 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013239 | CAPN12
Description
Bos taurus calpain 12 (CAPN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001192697]
Coordinates
chr18:48743599-48743977:-
Coord C1 exon
chr18:48743861-48743977
Coord A exon
chr18:48743705-48743763
Coord C2 exon
chr18:48743599-48743625
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCTCACCCCTCTCTGCACAGGCT
3' ss Score
9.23
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTTCCACCTGAACAACCAGCTGACCCAGGCTCTCACGAGCCGATACCGTGACAGCCGCCTGCGTGTGGACTTTGAGCGCTTCGTGTCCTGCATGGCCCAGCTCATCTGCGTCTTCC
Seq A exon
GCTACTGCAGCCAGCACCTGGATGGGGGCGAGGGGGTCGTCTGCCTGACCCACAGACAG
Seq C2 exon
TGGATGCAGGTGGCCACCTTCTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013239-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PD(6.2=5.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]