RnoEX6001996 @ rn6
Exon Skipping
Gene
ENSRNOG00000020389 | Capn12
Description
calpain 12 [Source:RGD Symbol;Acc:1307341]
Coordinates
chr1:87077311-87078348:+
Coord C1 exon
chr1:87077311-87077427
Coord A exon
chr1:87077513-87077571
Coord C2 exon
chr1:87077654-87078348
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCCCGGCCTCTCACACACAGGCC
3' ss Score
8.9
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTTCCACCTGAACAACCAGCTGACCCAGGCTCTCACTAGCCGCTACCGAAACAGCCGGCTCCGCGTGGACTTCGAGCACTTTGTGTGTTGTGCAGCCCGGCTCACCTGCATCTTCC
Seq A exon
GCCACTGCTGCCAACACCTGGATGGCGGCGAGGGGGTCGTCTGCCTGACCCACAAACAG
Seq C2 exon
TGGTCGGAGGTGGCCACCTTCTCATAGGCTTGAAGCTGAGGGAGTCTGCCCTGCTGCCCTGCTGCCCTGCTTGGTGCCAGTGATGGAAGATGAACATGGATGAGCTCGGCTTGGGCCCAACTTGCTGTCACACAGGTGGAGGCTATGGTGTCTGTCTTCTGGCTATGTGGTCCTGGCTGGCCTCACAAGTGCTGGGATTACGAGCTGGAGCTGTCCCAAACAGAACTGTCTTCCTTTTACAACTTGTGCATGTCAGTCCCTGCATGGAGGCCCATAAACCACACACAGGCACTGGGCCAGTGAGCACTGCAAGCTCCCTGGGGAATGACGGGGACGCAGGGAGAAGATGACACCAGAGTCCTTCTTAAAAATATTACTTGTTTTATTCTCCCATCCCCAGAGGGTGGTTTATCCAGAAACCAAGAAAATAAAAATCAATCAGAATAAACTCAAGGGGGTGGGTGGAGAGAAACCCATTAACGACCAGGCAGGCAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020389-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACAACCAGCTGACCCAG
R:
AAGCCTATGAGAAGGTGGCCA
Band lengths:
140-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]