MmuEX6009485 @ mm9
Exon Skipping
Gene
ENSMUSG00000054083 | Capn12
Description
calpain 12 [Source:MGI Symbol;Acc:MGI:1891369]
Coordinates
chr7:29677638-29678604:+
Coord C1 exon
chr7:29677638-29677754
Coord A exon
chr7:29677842-29677900
Coord C2 exon
chr7:29677981-29678604
Length
59 bp
Sequences
Splice sites
3' ss Seq
CCCTGGCCTCTCCCACACAGGCC
3' ss Score
9.49
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCTTCCACCTCAACAACCAGCTGACCCAGTCCCTCACTAGCCGCTACCGGGACAGCCGGCTCCGTGTGGACTTCGAGCGCTTCGTGTGCTGTGCAGCCCGGCTCACCTGCATCTTCC
Seq A exon
GCCACTGCTGCCAACACCTGGATGGCGGCGAGGGGGTCGTCTGCCTGACCCACAAACAG
Seq C2 exon
TGGTCGGAGGTGGCTACCTTCTCATAGGTTTGAAGCTGAGGGAGGTCACCCTGCTGCCCGACTCACTGTCACAAAGGTGGTGGCTATGTAACCCTGGCCGGCCTCACAAGTGCTGGGATTACGAGCTGGAGCCATCCCAAACAGAACTGCCACCCTTCCTTTTGAAGCCTCTTCATGTCAGTCCCTGCTTAGAGAGGGGCACAACCCCCACACAGGCACTGGGCTGGTGGGCACTGCCAGCTCCTTGGGGCATGAACAGAGATGCAGGGAGAAGATGACACCAGAGTCCTTCTTAAAAATATTACATGTTTTATTCTCCCATCCCCAGAGGGTGGTTTATCCAGAAACCAAGAAAATAAAAATCAATCAGAATAAACTCAAGGGGGCGAGTGGAGAGAAACCCATTAACGACCAGGCAGGCAGGCCAGCAGCCTGCCTCCACCTCAGAAGGTCCCCAGAGACCTCTGCCCACCGCCACGAGGGGAAAATCAGGAGGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054083-'19-20,'19-18,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.030
Domain overlap (PFAM):
C1:
PF134051=EF-hand_6=PD(6.2=5.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCCAGTCCCTCACTAGC
R:
ACCTCCCTCAGCTTCAAACCT
Band lengths:
143-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: