HsaEX0012356 @ hg38
Exon Skipping
Gene
ENSG00000182472 | CAPN12
Description
calpain 12 [Source:HGNC Symbol;Acc:HGNC:13249]
Coordinates
chr19:38733703-38734389:-
Coord C1 exon
chr19:38734319-38734389
Coord A exon
chr19:38734142-38734204
Coord C2 exon
chr19:38733703-38733781
Length
63 bp
Sequences
Splice sites
3' ss Seq
GCCCCCGACCCCCAACACAGCAT
3' ss Score
3.28
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CCAGGGCCCATACCTCCACCCCCAGAGAGATCGGGCTCAGGACCTGTGAGCAGCTGCTGCAGTGTTTCGGG
Seq A exon
CATGGGCAAAGCCTGGCCTTACACCACTTCCAGCAGCTCTGGGGCTACCTCCTGGAGTGGCAG
Seq C2 exon
GCCATATTTAACAAGTTCGATGAGGACACCTCTGGAACCATGAACTCCTACGAGCTGAGGCTGGCACTGAATGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182472_MULTIEX1-4/5=3-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0003627=EF-hand_1=PU(6.9=9.5)
C2:
PF0003627=EF-hand_1=PD(86.2=92.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACCTCCACCCCCAGAGAG
R:
CATTCAGTGCCAGCCTCAGC
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development