MmuEX6009488 @ mm9
Exon Skipping
Gene
ENSMUSG00000054083 | Capn12
Description
calpain 12 [Source:MGI Symbol;Acc:MGI:1891369]
Coordinates
chr7:29675175-29676008:+
Coord C1 exon
chr7:29675175-29675245
Coord A exon
chr7:29675343-29675405
Coord C2 exon
chr7:29675930-29676008
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCAGGTGTCCTCACTTGCAGCGT
3' ss Score
8.49
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CGAGGGCCAACACCAGGACCCCTGGAGAGATTGGGCTTAGGACCTGCGAACAGCTTGTGCAGTGTTTTGGG
Seq A exon
CGTGGGCAAAGACTGTCCCTACACCACTTCCAGGAGCTCTGGGGCCATCTCATGTCATGGCAG
Seq C2 exon
GCCACATTTGACAAGTTTGATGAAGATGCCTCTGGGACAATGAACTCCTGTGAACTGAGGCTGGCACTGACTGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054083-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134051=EF-hand_6=PU(6.2=9.5)
C2:
PF134051=EF-hand_6=FE(81.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGGCCAACACCAGGA
R:
CCAGCCTCAGTTCACAGGAGT
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: