RnoEX6001997 @ rn6
Exon Skipping
Gene
ENSRNOG00000020389 | Capn12
Description
calpain 12 [Source:RGD Symbol;Acc:1307341]
Coordinates
chr1:87074845-87075641:+
Coord C1 exon
chr1:87074845-87074915
Coord A exon
chr1:87075013-87075075
Coord C2 exon
chr1:87075563-87075641
Length
63 bp
Sequences
Splice sites
3' ss Seq
ACCATGTGTCCTCACTGCAGCGT
3' ss Score
9.09
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTAGGAACAACACCAGGACCTCTGGAGAGATTGGCCTTAGGACCTGCGAACAGCTTGTGCAGTGTTTTGGG
Seq A exon
CGTGGGCAAAGATTGGCCCTATACCACTTCCAGGAACTCTGGGGCCATCTCCTGTCATGGCAG
Seq C2 exon
GCCACATTTGACAAGTTCGATGAAGATGCTTCTGGGACAATGAACTCCTGTGAACTGAGGCTGGCACTGACTGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020389-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACAACACCAGGACCTCT
R:
CCAGCCTCAGTTCACAGGAGT
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]