BtaEX6082182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013239 | CAPN12
Description
Bos taurus calpain 12 (CAPN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001192697]
Coordinates
chr18:48746911-48748033:-
Coord C1 exon
chr18:48747963-48748033
Coord A exon
chr18:48747812-48747874
Coord C2 exon
chr18:48746911-48746989
Length
63 bp
Sequences
Splice sites
3' ss Seq
ACCAGATGCTCCCTCCCCAGCAT
3' ss Score
4.54
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCAGGGCCCATGCCCAGACCCCCAGAGAAATCGGGCTCAGGACCTGTGAGCAGCTGCTGCAATGTTTTGGG
Seq A exon
CATGGGGGAAGCCTGGACTTGTACCACTTCCAGCAGCTCTGGGGCCACCTCCTGGAGTGGCAG
Seq C2 exon
GCCACATTCGATAAGTTCGACGAGGACGCCTCTGGAACCATGAACTCCTATGAGCTGAGGCTGGCGCTGAATGCGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013239-'18-17,'18-16,19-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134051=EF-hand_6=PU(6.2=9.5)
C2:
PF134051=EF-hand_6=FE(81.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACCCCCAGAGAAATCG
R:
CATTCAGCGCCAGCCTCAG
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]