HsaEX0012384 @ hg19
Exon Skipping
Gene
ENSG00000203697 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:1485]
Coordinates
chr1:223807894-223813590:-
Coord C1 exon
chr1:223813507-223813590
Coord A exon
chr1:223810517-223810602
Coord C2 exon
chr1:223807894-223807968
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTATGGAATTTGCAGGTG
3' ss Score
6.91
5' ss Seq
TGAGTAGGT
5' ss Score
3.27
Exon sequences
Seq C1 exon
GTCTCCAGTGCAGCCGAAGCCGAAGCCATCACCAGCCAGAAGCTGGTTAAGAGTCATGCGTACTCTGTCACTGGAGTCGAAGAG
Seq A exon
GTGAATTTCCAGGGCCATCCAGAGAAGCTGATCAGACTCAGGAATCCATGGGGTGAAGTGGAGTGGTCGGGAGCCTGGAGCGATGA
Seq C2 exon
TGCACCAGAGTGGAATCACATAGACCCCCGGCGGAAGGAAGAACTGGACAAGAAAGTTGAGGATGGAGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000203697_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(16.2=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCAGTGCAGCCGAAG
R:
CAGAATTCTCCATCCTCAACTTTCT
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)