RnoEX6045715 @ rn6
Exon Skipping
Gene
ENSRNOG00000003468 | Capn8
Description
calpain 8 [Source:RGD Symbol;Acc:620085]
Coordinates
chr13:101013968-101018137:+
Coord C1 exon
chr13:101013968-101014051
Coord A exon
chr13:101016376-101016461
Coord C2 exon
chr13:101018063-101018137
Length
86 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTGTGGATCTTGCAGGTG
3' ss Score
8.27
5' ss Seq
TAAGTATGT
5' ss Score
4.58
Exon sequences
Seq C1 exon
GTCTCAACTGCAGCTGAAGCAGAAGCCACCACCAGGCAAAAGCTGGTTAAGGGTCATGCATACTCTGTTACTGGAGTCGAAGAG
Seq A exon
GTGAATTTCCATGGCCGTCCAGAGAAGCTGATCAGGTTGAGGAACCCATGGGGTGAAGTGGAGTGGTCGGGAGCCTGGAGTGATAA
Seq C2 exon
TGCACCTGAGTGGAATTACATAGATCCAAGGAGGAAGGAGGAGCTGGACAAGAAAGCAGAAGATGGCGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003468-'10-9,'10-8,11-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAACTGCAGCTGAAGCA
R:
CAGAACTCGCCATCTTCTGCT
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]