MmuEX0009084 @ mm9
Exon Skipping
Gene
ENSMUSG00000038599 | Capn8
Description
calpain 8 [Source:MGI Symbol;Acc:MGI:2181366]
Coordinates
chr1:184529673-184533852:+
Coord C1 exon
chr1:184529673-184529756
Coord A exon
chr1:184532160-184532245
Coord C2 exon
chr1:184533778-184533852
Length
86 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTGTGGATCTTGCAGGTG
3' ss Score
8.27
5' ss Seq
TAGGTCTGT
5' ss Score
3.44
Exon sequences
Seq C1 exon
GTCTCAAACGCAGCCGAAGCAGAAGCCACCACCAGGCAAAAGCTGGTTAAGGGCCACGCATACTCTGTGACTGGAGTCGAAGAG
Seq A exon
GTGGATTTCCGTGGCCTCCCAGAGAAGCTGATCAGGTTGAGGAACCCGTGGGGTGAAGTGGAGTGGACGGGAGCCTGGAGTGATAG
Seq C2 exon
TGCACCTGAGTGGAATTACATAGATCCACAGAAGAAGGGAGAACTGGACAAGAGAGCAGAAGATGGGGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038599-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.096
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAAACGCAGCCGAAGC
R:
CAGAACTCCCCATCTTCTGCT
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: