GgaEX6029119 @ galGal4
Exon Skipping
Gene
ENSGALG00000009382 | CAPN8
Description
calpain 8 [Source:HGNC Symbol;Acc:HGNC:1485]
Coordinates
chr3:17058161-17060409:+
Coord C1 exon
chr3:17058161-17058244
Coord A exon
chr3:17058883-17058968
Coord C2 exon
chr3:17060335-17060409
Length
86 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTGTCGATCTTTTAGGTC
3' ss Score
9.57
5' ss Seq
TAAGTAGGT
5' ss Score
4.16
Exon sequences
Seq C1 exon
ATAACTCGTGCATCTGAAACAGAAGCAATCACGAGTCTGAAGCTTGTGAAAGGACATGCTTATTCTGTCACTGGGGCAGAAGAG
Seq A exon
GTCTATTACCGAGGACGGCCAGAGAAACTTGTGAGGCTTAGAAATCCCTGGGGTGAAATAGAATGGACTGGAGCGTGGAGTGATAA
Seq C2 exon
TGCTCCCGAATGGAATTATATTGATCCCAAACAAAAGCAGGCTCTGGATAAGCAAGTAGATGATGGAGAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382-'9-8,'9-5,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(10.0=100)
A:
PF0064816=Peptidase_C2=FE(10.0=100)
C2:
PF0064816=Peptidase_C2=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACTCGTGCATCTGAAACAGA
R:
CAAAATTCTCCATCATCTACTTGCT
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]