DreEX6066288 @ danRer10
Exon Skipping
Gene
ENSDARG00000010758 | capn12
Description
calpain 12 [Source:ZFIN;Acc:ZDB-GENE-050419-245]
Coordinates
chr18:36707916-36708831:+
Coord C1 exon
chr18:36707916-36707999
Coord A exon
chr18:36708576-36708661
Coord C2 exon
chr18:36708754-36708831
Length
86 bp
Sequences
Splice sites
3' ss Seq
CACTGTTTGTGTATGTTTAGGTC
3' ss Score
8.18
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GCCACCACTGTGAAGGACATTGGCACTGTGACCCCAGAGGGTCTCATCAAAGGTCATGCCTATGCCATCACTGAAACAGGCAAG
Seq A exon
GTCAAGAAGGCTTCTGAAGAGGTCTTTCTGCTGAGACTGCGTAACCCCTGGGGATTTGTTGAGTACTGCGGACCCTGGAGTGACAA
Seq C2 exon
GTGTAAAGACTGGGACTTCGTAGACAACACTGAGAAGACGAAACTTGAATTGGCCAAAGTTGAAGATGGAGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010758-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.4=100)
C2:
PF0064816=Peptidase_C2=FE(8.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCACTGTGAAGGACATT
R:
AATTCTCCATCTTCAACTTTGGCCA
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]