DreEX6099413 @ danRer10
Exon Skipping
Gene
ENSDARG00000055592 | capn2b
Description
calpain 2, (m/II) large subunit b [Source:ZFIN;Acc:ZDB-GENE-050522-84]
Coordinates
chr22:26318657-26321851:-
Coord C1 exon
chr22:26321768-26321851
Coord A exon
chr22:26321616-26321701
Coord C2 exon
chr22:26318657-26318725
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTAAAGCTTTTTTGTCTCAGGTG
3' ss Score
6.71
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATCACAAGTGCTGCTGATTCAGAAGCCATCACTCGTCAGAAGCTGGTCAAAGGCCACGCCTACTCACTCACAGGGGCAACAGAG
Seq A exon
GTGAACTATCGTGGTCGCAAGGAAAAGCTGGTTCGTATGCGCAACCCTTGGGGACAGGTGGAGTGGACCGGAGCCTGGAGCGACAA
Seq C2 exon
TTCACCTGAATGGAACAGTGTTGCGGCATCAGAGCGTCCAGACGCCAGCGCTGAGGATGGTGAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055592-'9-12,'9-10,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.375
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.1=100)
A:
PF0064816=Peptidase_C2=FE(9.4=100)
C2:
PF0064816=Peptidase_C2=FE(7.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAAGTGCTGCTGATTCAGA
R:
AAAATTCACCATCCTCAGCGCT
Band lengths:
151-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]