HsaEX6036954 @ hg38
Exon Skipping
Gene
ENSG00000162909 | CAPN2
Description
calpain 2 [Source:HGNC Symbol;Acc:HGNC:1479]
Coordinates
chr1:223749039-223752071:+
Coord C1 exon
chr1:223749039-223749122
Coord A exon
chr1:223750890-223750975
Coord C2 exon
chr1:223751997-223752071
Length
86 bp
Sequences
Splice sites
3' ss Seq
CCTTTTATCTAATCCTGCAGGTT
3' ss Score
10.75
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
Exon sequences
Seq C1 exon
ATCACCAGCGCCGCGGACTCGGAGGCCATCACGTTTCAGAAGCTGGTGAAGGGGCACGCGTACTCGGTCACCGGAGCCGAGGAG
Seq A exon
GTTGAAAGTAACGGAAGCCTACAGAAACTGATCCGCATCCGAAATCCCTGGGGAGAAGTGGAGTGGACAGGGCGGTGGAATGACAA
Seq C2 exon
CTGCCCAAGCTGGAACACTATAGACCCAGAGGAGAGGGAAAGGCTGACCAGACGGCATGAAGATGGAGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162909-'30-33,'30-32,32-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.346
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(10.2=100)
A:
PF0064816=Peptidase_C2=FE(10.5=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCGGAGGCCATCACGTTT
R:
AGAATTCTCCATCTTCATGCCGT
Band lengths:
143-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains