GgaEX1012798 @ galGal4
Exon Skipping
Gene
ENSGALG00000009360 | CAPN2
Description
calpain-2 catalytic subunit precursor [Source:RefSeq peptide;Acc:NP_990411]
Coordinates
chr3:17030495-17032344:-
Coord C1 exon
chr3:17032261-17032344
Coord A exon
chr3:17031225-17031310
Coord C2 exon
chr3:17030495-17030569
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGCTCTTCTAATCCCACCAGGTG
3' ss Score
9.76
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ATCACCAGTGCAGCTGAGACAGAGGCAGTCACGTCGCAGAAGCTGGTGAAGGGACACGCGTACTCCGTCACCGGGGCAGAGGAG
Seq A exon
GTGAACTTCCGTGGAAGTATCCAGAAGCTCATCAGAATCCGAAATCCCTGGGGGGAAGTGGAGTGGACAGGGAAATGGAATGACAA
Seq C2 exon
CTGCCCAAACTGGAGTGGTGTTGACCCAGAGGTGCGGGAGCGGCTGACGAGGAGACATGAGGATGGGGAGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009360-'11-11,'11-9,13-11
Average complexity
S
Mappability confidence:
90%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(11.2=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
ENSGALT00000015245fB5741
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAGCTGAGACAGAGGC
R:
AAACTCCCCATCCTCATGTCTC
Band lengths:
151-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]