RnoEX0016699 @ rn6
Exon Skipping
Gene
ENSRNOG00000034015 | Capn2
Description
calpain 2 [Source:RGD Symbol;Acc:2268]
Coordinates
chr13:100899541-100901913:-
Coord C1 exon
chr13:100901830-100901913
Coord A exon
chr13:100900764-100900849
Coord C2 exon
chr13:100899541-100899615
Length
86 bp
Sequences
Splice sites
3' ss Seq
TTTTTCATTGGATCCTTCAGGTT
3' ss Score
8.67
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
ATCACCAGCGCTGCGGATTCTGAGGCCGTTACGTACCAGAAGTTGGTGAAAGGACATGCGTACTCCGTCACTGGAGCCGAGGAG
Seq A exon
GTTGAAAGCTCAGGAAGCCTGCAGAAATTGATACGTATCAGGAACCCCTGGGGACAAGTGGAGTGGACCGGGAAGTGGAATGACAA
Seq C2 exon
CTGCCCCAGCTGGAACACGGTTGACCCAGAAGTAAGGGCAAATCTAACAGAACGGCAGGAGGACGGAGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034015-'12-11,'12-10,13-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCAGCGCTGCGGATT
R:
CAGAATTCTCCGTCCTCCTGC
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]