MmuEX6029806 @ mm10
Exon Skipping
Gene
ENSMUSG00000026509 | Capn2
Description
calpain 2 [Source:MGI Symbol;Acc:MGI:88264]
Coordinates
chr1:182487715-182490048:-
Coord C1 exon
chr1:182489965-182490048
Coord A exon
chr1:182488994-182489079
Coord C2 exon
chr1:182487715-182487789
Length
86 bp
Sequences
Splice sites
3' ss Seq
TCTTTCATTGGATCCTTCAGGTT
3' ss Score
8.32
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
ATCACCAGCGCTGCAGATTCTGAGGCCGTTACGTACCAGAAGTTGGTGAAAGGACATGCGTACTCTGTCACCGGAGCCGAGGAG
Seq A exon
GTTGAAAGTTCAGGAAGCCTGCAGAAATTGATCCGCATCAGGAATCCCTGGGGACAAGTAGAGTGGACCGGGAAGTGGAATGACAA
Seq C2 exon
TTGCCCCAGCTGGAACACGGTTGACCCAGAAGTAAGGGCAAATCTAACCGAACGGCAGGAGGACGGAGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026509-'12-14,'12-12,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.0=100)
A:
PF0064816=Peptidase_C2=FE(9.3=100)
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACCAGCGCTGCAGATTC
R:
CAGAATTCTCCGTCCTCCTGC
Band lengths:
159-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types