HsaEX0016093 @ hg19
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:23432]
Coordinates
chr9:17235656-17273864:+
Coord C1 exon
chr9:17235656-17235790
Coord A exon
chr9:17236407-17236586
Coord C2 exon
chr9:17273731-17273864
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTTGTGGTACTGTTCTACAGGAC
3' ss Score
8.23
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
AGAGAGTCAGTACTGAAACAGGAAATAAATGACCTTGTAAAACGGAAAATTGCAGTAGATGAAGAAAATGCTTTCTTAAGGAAAGAATTCAGTGACTTGGAGAAGAAATTTAAAGATAAAAGTCAAGAAATTAAG
Seq A exon
GACACTAAGGAGTGTGTACAGAACAAAGAAGAGCAAAACAGACTAGTTATAAAAAATCTGGAGGAGGAAAACAAGAAATTAAGTACCCGCTGCACTGACCTGCTAAATGACCTGGAGAAATTGAGGAAGCAGGAAGCACATTTGAGAAAAGAAAAATATAGCACTGATGCAAAAATAAAG
Seq C2 exon
ACCTTTGAAGACAATTTAATTGAAGCAAGGAAAGAAGTTGAAGTATCACAGAGTAAATACAATGCTCTATCATTACAGTTGAGTAATAAACAGACTGAACTTATCCAGAAGGATATGGATATTACCCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.063 C2=0.000
Domain overlap (PFAM):
C1:
PF061568=DUF972=FE(59.5=100),PF0116613=TSC22=FE(93.6=100)
A:
PF061568=DUF972=PD(20.3=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGTCAGTACTGAAACAGGA
R:
TCCTTCTGGATAAGTTCAGTCTGT
Band lengths:
248-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)