BtaEX0009448 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001847 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr8:27218650-27249807:-
Coord C1 exon
chr8:27249673-27249807
Coord A exon
chr8:27248888-27249058
Coord C2 exon
chr8:27218650-27218787
Length
171 bp
Sequences
Splice sites
3' ss Seq
CTATTCTACGGGACACTAAGGAG
3' ss Score
-3.92
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
AGAGAATCAGGACTAACACAGGAAATAAATGACCTTGTAAAACGGAAGATTGCAGTAGATGAAGAAAATGATTTCTTAAGGAAAGAATTCAGTGACTTGCAGAAGAAATTTAAAGAGAAAAGTCAAGAAGTTAAG
Seq A exon
GAGTGTGTGCAGATTAAGGAAGAGCAAAACAGGCTGGTTATAAAAAATCTGAAGGAGGAAAATGAGAAATTAAGTACCCACTGCGCTGACCTGCTAAATGAGCTGGAGAAACTGAGGAAGCAGGAAGCACATTGGAGAAAAGAAAAATTTAGCATTGATGCAAAAGTAAAG
Seq C2 exon
GCCTTTGAAGACAATTTAATTGAAGCAAGGCAAGAAATTGAAGTATCACAGAGCAAATATAATGCACTATCATTAGAGCTGAATAATAAACAGACAGAACTTATGCAGAAGGATATGGATATTACCTTGGTCAGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001847_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAATCAGGACTAACACAGGA
R:
TCCTTCTGCATAAGTTCTGTCTGT
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development