DreEX0022613 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26300511-26307113:-
Coord C1 exon
chr1:26306979-26307113
Coord A exon
chr1:26306189-26306338
Coord C2 exon
chr1:26300511-26300644
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTTTTCCCGGCAGGAA
3' ss Score
12.18
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AAAGTGACGGCAGAAGAGCAGGAGATAAACAAGCGAGTCCAGCAGTTGCGTGGCAGTGAAGAGGAGTGCACTCTAATGAAGAAAGAACTGGCAGCTCTGCAGCACAGACTGGGGAATAAGAGTCGACAACTTAAG
Seq A exon
GAAGCGAGGAGGCAAGCGCAGGAGTGTGAGGAGGAGGGCAGGCGTGCCCTACAGGAAGCCAGGCAACAATTAGATGCTCAGCACTCGGCCTCTCAGGCAGAGCTGGAGAGATTGCGGGACCAAGAGGCCGTCAGCAGTTCCAGAGTCAAG
Seq C2 exon
AATTTGGAAGAGGAAGTGTTCAGAAGCAGACAGGATTTGCTAGAGGCTCAGAGCCGCTCAACTGCTTTGTCCCTTCAGCTATCCTCAGTAGAACGAGAAAGAGCTGACAACGAACAACAACTCTGTCAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=0.740 C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGACGGCAGAAGAGCAG
R:
TCGTTGTCAGCTCTTTCTCGT
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]