GgaEX7004637 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GI47]
Coordinates
chrZ:32662310-32669252:+
Coord C1 exon
chrZ:32662310-32662444
Coord A exon
chrZ:32663033-32663212
Coord C2 exon
chrZ:32669119-32669252
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTTGTGGTACTGTTCTACAGGAC
3' ss Score
8.23
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGACTCTCAGGACAGCAGCAAGAGATAAATAACTTAATTCAGAGAAAAATTGCTGTGGATGAAGAAAATGCCTGTTTGAAGAATGAATTCAGTAACTTGAAGCAGAAATTTAAAGATAAAAGCCAAGAACTTAAG
Seq A exon
GACACTGAGGAGTGTGCACAGAAGAAGGAAGAGCAAAACAGACTGGTTATAAAAAGCCTGGAGGAGGAAAATAAGGGATTAAATGCTTGCTGTGCTGACCTGCTAAATGACCTGGAGAAACTGAGGAAGCAGGAGGTACAATGGAAAGCAGAAAAATGTGGCAGTGATGCCAGAATAAAG
Seq C2 exon
ACATTGGAAACCAATTTAACGGTTGCAAGAGAACAACTAAAAGAGTTAAGCAGTAAATGCAGTAACTTGTCATCTCAGCTAGCGGTGAACCAGAAAGAACTCTCCCAAAAAGAATGTGATATGAACAGGACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028298-'5-2,'5-1,7-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.067 C2=0.011
Domain overlap (PFAM):
C1:
PF061607=EzrA=PU(31.2=97.8)
A:
PF061607=EzrA=FE(41.8=100),PF078886=CALCOCO1=PU(41.7=58.3)
C2:
PF061607=EzrA=PD(24.8=77.8),PF078886=CALCOCO1=FE(52.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCTCAGGACAGCAGCAA
R:
TGGGAGAGTTCTTTCTGGTTCAC
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]