MmuEX1007154 @ mm10
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84888643-84971264:+
Coord C1 exon
chr4:84888643-84888731
Coord A exon
chr4:84957000-84957179
Coord C2 exon
chr4:84971131-84971264
Length
180 bp
Sequences
Splice sites
3' ss Seq
CTTGTGGTACTGTTCTACAGGAC
3' ss Score
8.23
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTGACAAGGAATTTGTATGGTCTCTGTGGAGGCGTCTTCAGGCAACAAACCCAGATCTCACTCAAACTGTCAGTTTGGTTGTGGAAAG
Seq A exon
GACGCCAAGGAGTGTGTACAGAGTAAAGAAGAGCAAAACAGATTGGTTATAAAAAACCTGGAAGAGGAAAATGAGAGATTACGAACACGCTGCACTGACCTGCTAAATGACCTGGAGAAACTGAGGAACCAGGAAGCACACTGGAGAAAAGAGAAACACAGTGTGGACACGAGAGTAAAG
Seq C2 exon
GTCCTTGAAGAAAATTTGATTGAAGCAAAGAAAGAAATTGAGTCAGCACAGACTAAATATAATGTTGTGTCACAACAGCTGAATAACAAACAGGCTGAACTTCTCCAAAAAGATATGGATATTACATTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070_MULTIEX2-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000047023fB7965
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAATTTGTATGGTCTCTGTGGA
R:
CCATATCTTTTTGGAGAAGTTCAGCC
Band lengths:
202-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types