HsaEX0016511 @ hg19
Exon Skipping
Gene
ENSG00000172752 | COL29A1
Description
collagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:26674]
Coordinates
chr3:130098261-130107977:+
Coord C1 exon
chr3:130098261-130098893
Coord A exon
chr3:130103647-130104207
Coord C2 exon
chr3:130107423-130107977
Length
561 bp
Sequences
Splice sites
3' ss Seq
AGAATGCACTTCTTTTTCAGGCT
3' ss Score
6.44
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAAGGAAAATTGCATGCGACTTGGACTGATGAGTTACAGCAATAGTGCCAAGACTATTTCTTTTCTTAAATCAAGCACAACCCAATCTGAATTTCAGCAGCAAATCAAGAATCTTTCTATCCAAGTTGGGAAATCCAATACAGGGGCTGCCATTGATCAGATGAGAAGAGACGGCTTCTCAGAGTCATATGGCAGCAGAAGAGCACAAGGAGTGCCTCAGATTGCAGTTCTGGTCACCCACAGACCATCAGATGATGAGGTGCATGATGCTGCGCTGAACCTTCGACTGGAGGATGTAAACGTGTTTGCCTTGAGCATCCAAGGGGCTAACAATACCCAGTTAGAAGAAATAGTGTCTTATCCTCCAGAACAGACAATTTCCACGCTGAAGTCCTATGCAGACTTAGAAACTTACAGTACAAAGTTCCTGAAAAAGCTCCAGAATGAAATATGGTCCCAAATTTCTACTTATGCTGAACAAAGGAATCTTGATAAAACTG
Seq A exon
GCTGTGTGGATACAAAAGAGGCTGATATCCACTTCCTCATTGATGGCTCAAGCAGCATCCAGGAGAAACAGTTTGAGCAAATCAAGAGATTTATGTTGGAAGTGACAGAAATGTTTAGCATTGGCCCAGACAAAGTCCGAGTTGGAGTTGTGCAGTATTCAGATGACACAGAAGTGGAATTTTATATCACTGACTATTCTAATGATATTGACTTAAGAAAGGCTATTTTTAACATTAAGCAACTAACTGGTGGAACTTATACTGGGAAAGCTCTGGATTACATACTGCAAATAATAAAAAATGGAATGAAGGATAGAATGAGCAAGGTTCCCTGTTACCTCATTGTGTTGACTGATGGGATGTCCACAGACAGAGTCGTGGAACCTGCTAAGAGACTAAGGGCTGAGCAAATCACTGTTCATGCAGTTGGCATTGGGGCAGCTAATAAAATAGAACTGCAAGAAATTGCTGGGAAAGAAGAAAGGGTTAGCTTTGGGCAGAACTTTGATGCTTTGAAAAGCATAAAAAATGAAGTCGTTCGTGAAATCTGCGCTGAAAAAG
Seq C2 exon
GATGTGAAGACATGAAGGCCGACATCATGTTTCTGGTGGACAGTTCTTGGAGTATAGGAAATGAAAATTTTAGGAAAATGAAAATCTTCATGAAAAACCTGTTAACTAAAATTCAAATTGGTGCAGACAAAACCCAGATTGGTGTTGTTCAGTTCAGTGATAAAACTAAGGAAGAGTTCCAGCTTAATAGATATTTTACACAGCAAGAAATTTCTGATGCAATAGATAGAATGTCTCTCATCAATGAAGGCACTTTAACTGGAAAGGCACTAAATTTTGTAGGTCAATACTTCACCCACTCCAAGGGGGCCCGTTTGGGGGCCAAAAAATTTCTCATCCTCATCACAGATGGAGTAGCGCAGGATGATGTGAGAGATCCTGCTAGAATTCTTCGGGGCAAAGATGTGACCATCTTCTCTGTAGGAGTATACAATGCCAATAGATCTCAGCTAGAAGAGATCAGTGGGGATAGCAGCCTAGTTTTTCATGTTGAGAACTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172752_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=84.4)
A:
PF0009223=VWA=WD(100=92.6)
C2:
PF0009223=VWA=WD(100=91.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAGCAGAAGAGCACAAG
R:
ACCAGAAACATGATGTCGGCC
Band lengths:
349-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)