RnoEX6037289 @ rn6
Exon Skipping
Gene
ENSRNOG00000010663 | Col6a5
Description
collagen type VI alpha 5 chain [Source:RGD Symbol;Acc:1565804]
Coordinates
chr8:114603652-114610130:-
Coord C1 exon
chr8:114609498-114610130
Coord A exon
chr8:114606633-114607193
Coord C2 exon
chr8:114603652-114604206
Length
561 bp
Sequences
Splice sites
3' ss Seq
CATGTTTGTTTCCTTTGTAGGCT
3' ss Score
10.9
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAAGGACAATTGCATGAGGCTTGGGCTGATGAGCTTCAGTGACAAGGCTCGGACTGTGTCTTCTCTGAAGTCAAGCACCAGCCAGTCTGACTTCCAGCAGCAAATCCAGAAGCTCTCGCTCCGGACGGGGGCATCTAATGTTGGGGCCGCCATTGAGCACATGAGGACAGAAGGCTTCTCAGAGTCCAGTGGCAGCAGAAAGGCACAGGGGGTCCCCCAGATTGCTGTGCTGGTCACCCACAGAGCGTCAGATGATGCGGTGCGGGAGGCTGCGCTGGACCTGCGCTTACAGGGTGTAACTATGTTTGCAATGAGCGTCCAAGGGGCCAACAACACACAGCTAGAAGACATAGTGTCATACCCTTCCAGACAGAGCATTTCCACACACAGCTCCTACAAGCACTTGGAATCATACAGTGGGAACTTCCTGAAGAAGATCCACAATGAAATCTGGACCCAGGTGTCTACCCATGCTGAACAAATGGAGCTGGATAAAACTG
Seq A exon
GCTGTGTGGACACAAAGGAGGCCGATATCTATTTCCTTATTGATGGGTCGTCCAGCATCCGCAGGAAAGAGTTTGAGCAAATCCAGATATTCATGTCCTCCGTGGTAGACATGTTTCCCATTGGCCCCAACAACGTCCGGGTTGGAGTTGTACAGTACTCACACAGGAACGAAGTGGAATTTCCTGTCTCTCAATACACGAAGGGCATCGAATTGAGGAAGGCTGTTTGGAACATTAAGCAACTCAAAGGTGGTACATTCACTGGGAAAGCCCTGGATTTCATCCTGCCAATAATCAAGAAGGGAAAGTCAGAGAGGATCCACGAAGTCCCCTGCTACCTCATCGTGCTGACTGATGGGAAATCAAACGACAGCGTTCTAGAACCTGCCAACAGACTGAGGGCCGAGCACATCACCATTCACGCCGTTGGGATTGGCGAGGCGAACAAGACACAGCTGCAACAAATTGCTGGGAAAGACGAAAGGGTTAGCTTTGGGCAGAATTTTGATTCTCTGAAGTACATAAAAAACGAAATTGTCCACCGCATCTGCTCTGATAAAG
Seq C2 exon
GATGTGAAGACATGAAGGCCGACATCATGTTCTTGGTGGACAGTTCTGGAAGCATAGGGCTTACAAATTTTGAGAAAATGAAAACTTTCATGAAAAACCTGGTGGGGAAGATTGAGATCGGCGCCGACAGATCCCAAGTCGGTGTCGTTCAGTTCAGTGACTACAATAAAGAAGAGTTCCAGCTTAATAAATACTCCACACGTGAGGAAGTTTATGCCGCCATAGATGGAATGTCTCCCATCAACAGAAACACTTTGACCGGAAGTGCACTAACCTTCGTAAATGAATACTTTGACATTTCCAAGGGGGGGCGTCCCCAGGTCAGAAAGTTCCTCATCCTCCTCACAGATGGAGAAGCCCAGGATGAAGTGGGGGGTCCGGCCATGGCGCTCAGGAGCAAAAGTGTGACTATCTTCTCTGTGGGTGTGTACGGTGCTAACAGGACTCAGTTGGAGGAGATCAGTGGGGAGGGAAGCCTGGTTTTCCATGTTGAGAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010663-'3-3,'3-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=84.0)
A:
PF0009223=VWA=WD(100=92.0)
C2:
PF0009223=VWA=WD(100=91.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATTTCCACACACAGCTCCT
R:
TGGCGGCATAAACTTCCTCAC
Band lengths:
348-909
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]