MmuEX6068392 @ mm10
Exon Skipping
Gene
ENSMUSG00000091345 | Col6a5
Description
collagen, type VI, alpha 5 [Source:MGI Symbol;Acc:MGI:3648134]
Coordinates
chr9:105933807-105940347:-
Coord C1 exon
chr9:105939715-105940347
Coord A exon
chr9:105936855-105937415
Coord C2 exon
chr9:105933807-105934361
Length
561 bp
Sequences
Splice sites
3' ss Seq
CACGTTTGTTTCCTTTTTAGGCT
3' ss Score
11.33
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAAGGACAACTGCATGCGGCTTGGGCTGATGAGCTTCAGCGACAGGGCTCAGACTATTTCTTCCCTGAGGTCAAGCGCCAACCAGTCTGAATTCCAGCAGCAAATCCAGAAACTCTCTCTCCAGACTGGGGCATCTAATGTTGGGGCCGCCATTGAGCAGATGAGGAAAGAAGGCTTCTCAGAGTCCAGTGGCAGCAGGAAGGCCCAGGGCGTCCCCCAGATTGCTGTGCTGGTCACCCACAGAGCATCAGATGACATGGTGCGGGAGGCTGCACTGGATCTGCGCTTGGAGGGTGTAACTATGTTTGCAATGGGCATCGAAGGGGCCAACAACACGCAATTAGAAGACATAGTGTCATACCCTTCCAGGCAGAGCATTTCCACACACAGCTCCTACAGTCACTTGGAATCATACAGTGGGAACTTCCTGAAGAAGATCCGCAATGAAATCTGGACCCAAGTTTCTACTCGTGCTGAACAAATGGAGCTGGATAAAACCG
Seq A exon
GCTGTGTGGATACAAAGGAGGCCGACATCTATTTTCTCATTGATGGGTCGTCCAGCATCCGTAAGAAAGAGTTTGAGCAAATCCAGATATTTATGTCATCTGTGATAGACATGTTTCCTATCGGCCCCAACAAAGTTCGGGTCGGAGTTGTGCAGTATTCACATAAGAATGAAGTGGAATTTCCTGTCTCTCGCTACACGGATGGCATTGACTTGAAAAAGGCTGTTTTTAACATCAAGCAACTCAAAGGTCTTACATTCACCGGGAAAGCCCTGGATTTCATATTGCCTCTCATAAAGAAGGGAAAAACAGAGAGGACCGACAGAGCCCCCTGTTACCTCATCGTGCTGACTGATGGAAAGTCAAATGACAGCGTTCTCGAACCTGCCAACAGACTGCGGGCTGAGCAGATCACCATTCACGCCATCGGGATTGGCGAGGCAAACAAAACACAGCTGCGGCAGATTGCTGGGAAGGACGAAAGGGTTAACTTCGGGCAGAACTTCGATTCTCTGAAGAGCATAAAAAATGAAATCGTTCACCGCATCTGCTCTGAAAAAG
Seq C2 exon
GATGTGAAGACATGAAGGCAGACATCATGTTTTTGGTGGACAGTTCTGGAAGCATAGGGCCTACAAATTTTGAGACAATGAAAACTTTCATGAAAAATCTGGTGGGGAAGATTCAGATTGGCGCCGACAGATCCCAAGTCGGTGTTGTTCAATTCAGTGACTATAACAGGGAAGAATTCCAGCTTAATAAATACTCCACGCATGAGGAAATTTATGCAGCCATAGATAGGATGTCTCCCATCAACAGAAACACTCTGACAGGAGGAGCACTAACCTTTGTAAATGAATACTTTGACCTTTCCAAGGGGGGGCGCCCCCAGGTCAGAAAGTTCCTTATCCTCCTCACAGATGGAAAAGCTCAGGACGAAGTGGGGGGCCCAGCCACGGCTCTCAGGAGCAAAAGTGTGACCATCTTCTCCGTGGGTGTGTATGGGGCCAATAGGGCTCAGCTGGAGGAGATCAGTGGAGATGGCAGTCTGGTTTTCCATGTTGAGAACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091345-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=84.0)
A:
PF0009223=VWA=WD(100=91.0)
C2:
PF0009223=VWA=WD(100=91.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCTTGGAGGGTGTAACTA
R:
TCGGCGCCAATCTGAATCTTC
Band lengths:
346-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types