HsaEX0018287 @ hg19
Exon Skipping
Gene
ENSG00000197446 | CYP2F1
Description
cytochrome P450, family 2, subfamily F, polypeptide 1 [Source:HGNC Symbol;Acc:2632]
Coordinates
chr19:41630624-41634159:+
Coord C1 exon
chr19:41630624-41630811
Coord A exon
chr19:41631398-41631539
Coord C2 exon
chr19:41633806-41634159
Length
142 bp
Sequences
Splice sites
3' ss Seq
CCACCTCCTCACCCACACAGGGC
3' ss Score
7.89
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
CCCGCGTGCAGGAGGAGATCGACCTCGTGGTGGGACGCGCGCGGCTGCCGGCGCTGAAGGACCGCGCGGCCATGCCTTACACAGACGCGGTGATCCACGAGGTGCAGCGCTTTGCAGACATCATCCCCATGAACTTGCCGCACCGCGTCACTAGGGACACGGCCTTTCGCGGCTTCCTGATACCCAAG
Seq A exon
GGCACCGATGTCATCACCCTCCTTAACACCGTCCACTACGACCCCAGCCAGTTCCTGACGCCCCAGGAGTTCAACCCCGAGCATTTTTTGGATGCCAATCAGTCCTTCAAGAAGAGTCCAGCCTTCATGCCCTTCTCAGCTG
Seq C2 exon
GGCGCCGTCTGTGCCTGGGAGAGTCGCTGGCGCGCATGGAGCTCTTTCTGTACCTCACCGCCATCCTGCAGAGCTTTTCGCTGCAGCCGCTGGGTGCGCCCGAGGACATCGACCTGACCCCACTCAGCTCAGGTCTTGGCAATTTGCCGCGGCCTTTCCAGCTGTGCCTGCGCCCGCGCTAACGCCCCGGCCCTTCCAGATTCGCCTGTGAGCGATGAGGCCCGCCCATGCGGGTTGCTACGTCCCCTTCTTGGTCCACAGTCTGCCCTCATCCCTCTGGCAGTCACGCTGTCTTCCCTGCATGCTGTGCCTGCCGCGTGCCCTTCCCCCATCCCTCCAATCTGTGCCCCGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197446-'7-8,'7-7,8-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=PD(12.2=91.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACACAGACGCGGTGATCC
R:
TTGCCAAGACCTGAGCTGAGT
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)