HsaEX0038726 @ hg19
Exon Skipping
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:29635]
Coordinates
chr15:66416237-66546085:-
Coord C1 exon
chr15:66545943-66546085
Coord A exon
chr15:66420644-66420749
Coord C2 exon
chr15:66416237-66416338
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGTTCTCCTGTGCAGGGC
3' ss Score
11.55
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CGCTCCCGGTGCCCGCTGCCCGCCGCCCGGCTCCCGGCTGCTCGCGGCCCCCTGCTCCTGCCTGGCGCTCTGGCCAGGCTCGGGCTCCGGAGGACAGGACCGCGCGACTGGCCGGCCGATCCCTGGGCCGGCCGCGGGAGCAG
Seq A exon
GGCCCGGGATGGTGCTCTCCCTGACGGGGCTCATTGCCTTCTCCTTCCTGCAAGCCACCCTTGCCCTGAACCCCGAGGACCCCAACGTGTGCAGCCACTGGGAGAG
Seq C2 exon
CTATGCTGTGACTGTCCAGGAATCGTATGCACACCCCTTCGATCAGATCTATTACACACGATGCACAGACATCCTCAACTGGTTCAAGTGCACCAGGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890-'0-2,'0-1,1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.114
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF079748=EGF_2=PU(14.7=19.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCCTGGCGCTCTG
R:
GCCTGGTGCACTTGAACC
Band lengths:
187-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)