HsaEX0038726 @ hg38
Exon Skipping
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF like domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr15:66123899-66253747:-
Coord C1 exon
chr15:66253605-66253747
Coord A exon
chr15:66128306-66128411
Coord C2 exon
chr15:66123899-66124000
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGTTCTCCTGTGCAGGGC
3' ss Score
11.55
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CGCTCCCGGTGCCCGCTGCCCGCCGCCCGGCTCCCGGCTGCTCGCGGCCCCCTGCTCCTGCCTGGCGCTCTGGCCAGGCTCGGGCTCCGGAGGACAGGACCGCGCGACTGGCCGGCCGATCCCTGGGCCGGCCGCGGGAGCAG
Seq A exon
GGCCCGGGATGGTGCTCTCCCTGACGGGGCTCATTGCCTTCTCCTTCCTGCAAGCCACCCTTGCCCTGAACCCCGAGGACCCCAACGTGTGCAGCCACTGGGAGAG
Seq C2 exon
CTATGCTGTGACTGTCCAGGAATCGTATGCACACCCCTTCGATCAGATCTATTACACACGATGCACAGACATCCTCAACTGGTTCAAGTGCACCAGGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890_CASSETTE5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF079748=EGF_2=PU(14.7=19.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCCTGGCGCTCTG
R:
GCCTGGTGCACTTGAACC
Band lengths:
187-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development