HsaEX6075426 @ hg38
Exon Skipping
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF like domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr15:66119086-66253737:-
Coord C1 exon
chr15:66253605-66253737
Coord A exon
chr15:66123899-66124000
Coord C2 exon
chr15:66119086-66119186
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATCTCCCATCTGGTTCTCAGCTA
3' ss Score
5.69
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCCCGCTGCCCGCCGCCCGGCTCCCGGCTGCTCGCGGCCCCCTGCTCCTGCCTGGCGCTCTGGCCAGGCTCGGGCTCCGGAGGACAGGACCGCGCGACTGGCCGGCCGATCCCTGGGCCGGCCGCGGGAGCAG
Seq A exon
CTATGCTGTGACTGTCCAGGAATCGTATGCACACCCCTTCGATCAGATCTATTACACACGATGCACAGACATCCTCAACTGGTTCAAGTGCACCAGGCACCG
Seq C2 exon
GATCAGTTATAAGACGGCGTATCGGAGAGGCCTCCGGACCATGTACCGGCGGAGGTCCCAGTGCTGCCCTGGCTACTATGAGAGCGGAGACTTCTGCATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890-'1-9,'1-5,4-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.050 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF079748=EGF_2=PU(14.7=19.2)
C2:
PF075468=EMI=PD(39.7=82.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains