GgaEX6008282 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20511700-20515728:-
Coord C1 exon
chr10:20515605-20515728
Coord A exon
chr10:20513065-20513166
Coord C2 exon
chr10:20511700-20511800
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTTGCTTCTAGCTA
3' ss Score
10.31
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTACAGCAGTGATGGCTCAATTGCTTTTCTGGTGGATTCTAAAAGGGCTTTTTCTGTCTTTTCTGCTCAAAACTGCTCTGTCCCTAAACCCAGATGATCCAAATGTTTGTAGTCATTGGGAAAG
Seq A exon
CTATGCTGTGACAGTACAGGAATCCTATGCTCATCCTTTTGATCAGATCTATTATACAAGATGTACTGACATACTGAACTGGTTCAAGTGCACTAGACACAG
Seq C2 exon
AATAAGTTATAAAACGGCATATCGAAGAGGACTAAGAACCATGTATCGGCGGAGATCCCAGTGCTGTCCCGGATATTATGAAAGTGGAGACTACTGTATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007639-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(12.3=23.7)
A:
PF075468=EMI=FE(46.6=100)
C2:
PF075468=EMI=PD(39.7=82.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGCAGTGATGGCTCAAT
R:
GTAGTCTCCACTTTCATAATATCCGG
Band lengths:
218-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]