RnoEX6036182 @ rn6
Exon Skipping
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:69971778-69979657:+
Coord C1 exon
chr8:69971778-69971875
Coord A exon
chr8:69976888-69976989
Coord C2 exon
chr8:69979557-69979657
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCCTCTGGTCCTCAGCTA
3' ss Score
6.78
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
ATGGCGCCGTCCACGGTGGGCCTCCTTGTTGTCTTCCTTCTGCAAGCGGCTCTCGCTCTGAACCCTGAGGACCCCAATGTGTGTAGCCACTGGGAGAG
Seq A exon
CTACGCCGTGACCGTGCAGGAGTCTTATGCACACCCCTTTGATCAGATCTACTACACACGATGTGCAGACATCCTCAACTGGTTCAAGTGTACCCGGCACCG
Seq C2 exon
GATCAGCTATAAGACGGCATATAGGCGCGGCCTCCGGACCATGTACCGGCGGAGGTCCCAATGCTGCCCTGGCTACTATGAGAATGGAGACTTCTGCATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075468=EMI=PU(12.3=27.3)
A:
PF075468=EMI=FE(46.6=100)
C2:
PF075468=EMI=PD(39.7=82.9),PF079748=EGF_2=PU(29.3=34.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGGGCCTCCTTGTT
R:
GAATGCAGAAGTCTCCATTCTCA
Band lengths:
187-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]