HsaEX6075426 @ hg19
Exon Skipping
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:29635]
Coordinates
chr15:66411424-66420771:-
Coord C1 exon
chr15:66420644-66420771
Coord A exon
chr15:66416237-66416338
Coord C2 exon
chr15:66411424-66411524
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATCTCCCATCTGGTTCTCAGCTA
3' ss Score
5.69
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CCTCCTTTGTTCTCCTGTGCAGGGCCCGGGATGGTGCTCTCCCTGACGGGGCTCATTGCCTTCTCCTTCCTGCAAGCCACCCTTGCCCTGAACCCCGAGGACCCCAACGTGTGCAGCCACTGGGAGAG
Seq A exon
CTATGCTGTGACTGTCCAGGAATCGTATGCACACCCCTTCGATCAGATCTATTACACACGATGCACAGACATCCTCAACTGGTTCAAGTGCACCAGGCACCG
Seq C2 exon
GATCAGTTATAAGACGGCGTATCGGAGAGGCCTCCGGACCATGTACCGGCGGAGGTCCCAGTGCTGCCCTGGCTACTATGAGAGCGGAGACTTCTGCATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=PU(14.7=19.2)
C2:
PF079748=EGF_2=PU(19.4=20.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTTTGTTCTCCTGTGCA
R:
TGCAGAAGTCTCCGCTCTCAT
Band lengths:
226-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)