MmuEX0028579 @ mm10
Exon Skipping
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64501523-64508808:+
Coord C1 exon
chr9:64501523-64501623
Coord A exon
chr9:64506028-64506129
Coord C2 exon
chr9:64508708-64508808
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATCTCTCGTCTGGTCTTCAGCTA
3' ss Score
5.82
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GCCCCGATGGCGCCGTCTGCGGTGGGCCTCCTTGTCTTCCTTCTGCAAGCTGCTCTTGCTCTGAACCCTGAAGACCCCAATGTGTGTAGCCACTGGGAGAG
Seq A exon
CTATGCCGTGACTGTGCAGGAGTCTTATGCACACCCCTTTGATCAGATCTACTACACACGATGTGCAGACATCCTCAACTGGTTCAAGTGTACCCGGCACCG
Seq C2 exon
GATCAGCTATAAGACCGCGTATAGGCGCGGCCTCCGGACCATGTACCGGCGGAGGTCCCAATGCTGCCCTGGCTACTATGAGAACGGAGACTTCTGCATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466-'9-7,'9-6,11-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCTCCTTGTCTTCCTTC
R:
ATGCAGAAGTCTCCGTTCTCA
Band lengths:
178-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types