GgaEX6008282 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17850138-17854165:-
Coord C1 exon
chr10:17854042-17854165
Coord A exon
chr10:17851502-17851603
Coord C2 exon
chr10:17850138-17850238
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTTGCTTCTAGCTA
3' ss Score
10.31
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTACAGCAGTGATGGCTCAATTGCTTTTCTGGTGGATTCTAAAAGGGCTTTTTCTGTCTTTTCTGCTCAAAACTGCTCTGTCCCTAAACCCAGATGATCCAAATGTTTGTAGTCATTGGGAAAG
Seq A exon
CTATGCTGTGACAGTACAGGAATCCTATGCTCATCCTTTTGATCAGATCTATTATACAAGATGTACTGACATACTGAACTGGTTCAAGTGCACTAGACACAG
Seq C2 exon
AATAAGTTATAAAACGGCATATCGAAGAGGACTAAGAACCATGTATCGGCGGAGATCCCAGTGCTGTCCCGGATATTATGAAAGTGGAGACTACTGTATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAGCAGTGATGGCTCAAT
R:
GTAGTCTCCACTTTCATAATATCCGG
Band lengths:
218-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]