DreEX6065222 @ danRer10
Exon Skipping
Gene
ENSDARG00000062686 | megf11
Description
multiple EGF-like-domains 11 [Source:ZFIN;Acc:ZDB-GENE-060503-252]
Coordinates
chr18:19353669-19361726:-
Coord C1 exon
chr18:19361611-19361726
Coord A exon
chr18:19354252-19354353
Coord C2 exon
chr18:19353669-19353769
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTTCTATTTTTCAGCTA
3' ss Score
10.71
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGGGGCCGGTACGGGCCTACCCATTAGCCCTGCCTGTGCTGGCTGTTCTGGGCCTCATTATCAGCGCATGGAGCCTCAACCCTGATGACCCCAATGTCTGCAGTCACTGGGAGAG
Seq A exon
CTATGCAGTGACTGTTCAGGAGTCTTACGCTCATCCTTTTGACCAGATCTACTATACCAGATGCACCGACATCCTCAACTGGTTCAAATGCACCAGACACAG
Seq C2 exon
GACCAGCTACAAGACCGCATATCGGCGCGGGGTGAGGACAATGTACCGTCGACGTTCACAGTGCTGTCCTGGCTACTTCGAGAGCGGGGACTTGTGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062686-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTACCCATTAGCCCTGC
R:
GACACACAAGTCCCCGCTCTC
Band lengths:
202-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]