RnoEX0053773 @ rn6
Exon Skipping
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:69859891-69976989:+
Coord C1 exon
chr8:69859891-69859991
Coord A exon
chr8:69971772-69971875
Coord C2 exon
chr8:69976888-69976989
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTTCTCCCACACAGGGC
3' ss Score
11.3
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CGCAGCTCCCGCTCCTGCCTGGGGACCTGAAACCGCTCCGGCTCCGGGGGATAGGATCGTGCGACTGGCTGGCCCAAGCCCTGGGCGCGCCGTGGAAGCAG
Seq A exon
GGCCTGATGGCGCCGTCCACGGTGGGCCTCCTTGTTGTCTTCCTTCTGCAAGCGGCTCTCGCTCTGAACCCTGAGGACCCCAATGTGTGTAGCCACTGGGAGAG
Seq C2 exon
CTACGCCGTGACCGTGCAGGAGTCTTATGCACACCCCTTTGATCAGATCTACTACACACGATGTGCAGACATCCTCAACTGGTTCAAGTGTACCCGGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634-'0-1,'0-0,1-1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(12.3=27.3)
C2:
PF075468=EMI=FE(46.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTGAAACCGCTCCG
R:
GTGCCGGGTACACTTGAACC
Band lengths:
179-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]