GgaEX1035862 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20513065-20519644:-
Coord C1 exon
chr10:20519525-20519644
Coord A exon
chr10:20515605-20515728
Coord C2 exon
chr10:20513065-20513166
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTTTCTTTATTTAGGTA
3' ss Score
11.78
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
TCAGAGTGCCAAGCAACTTCTGAAGAGCTTTCCTCTGCTGTTCTGTTAATGTGATGTGTGTCTTCGTGCACTATTAGTCTGCAAAAATAGGAGCCATTAGGAATTTTTTAGTACTTTGAG
Seq A exon
GTACAGCAGTGATGGCTCAATTGCTTTTCTGGTGGATTCTAAAAGGGCTTTTTCTGTCTTTTCTGCTCAAAACTGCTCTGTCCCTAAACCCAGATGATCCAAATGTTTGTAGTCATTGGGAAAG
Seq C2 exon
CTATGCTGTGACAGTACAGGAATCCTATGCTCATCCTTTTGATCAGATCTATTATACAAGATGTACTGACATACTGAACTGGTTCAAGTGCACTAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007639-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF075468=EMI=PU(12.3=23.7)
C2:
PF075468=EMI=FE(46.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTGCCAAGCAACTTCTGA
R:
TGTGTCTAGTGCACTTGAACCA
Band lengths:
220-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]