GgaEX1035862 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17851502-17858077:-
Coord C1 exon
chr10:17857962-17858077
Coord A exon
chr10:17854042-17854165
Coord C2 exon
chr10:17851502-17851603
Length
124 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTTTCTTTATTTAGGTA
3' ss Score
11.78
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
AGTGCCAAGCAACTTCTGAAGAGCTTTCCTCTGCTGTTCTGTTAATGTGATGTGTGTCTTCGTGCACTATTAGTCTGCAAAAATAGGAGCCATTAGGAATTTTTTAGTACTTTGAG
Seq A exon
GTACAGCAGTGATGGCTCAATTGCTTTTCTGGTGGATTCTAAAAGGGCTTTTTCTGTCTTTTCTGCTCAAAACTGCTCTGTCCCTAAACCCAGATGATCCAAATGTTTGTAGTCATTGGGAAAG
Seq C2 exon
CTATGCTGTGACAGTACAGGAATCCTATGCTCATCCTTTTGATCAGATCTATTATACAAGATGTACTGACATACTGAACTGGTTCAAGTGCACTAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCAAGCAACTTCTGAAGA
R:
CTGTGTCTAGTGCACTTGAACCA
Band lengths:
218-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]