HsaEX0040354 @ hg19
Exon Skipping
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:HGNC Symbol;Acc:7380]
Coordinates
chr3:49724582-49725101:-
Coord C1 exon
chr3:49724989-49725101
Coord A exon
chr3:49724797-49724911
Coord C2 exon
chr3:49724582-49724718
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCTCTTGCTCCCAGACT
3' ss Score
9.44
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GGCCTTCCACTACAACGTGAGCAGCCATGGTTGCCAACTGCTGCCATGGACTCAACACTCGCCCCACACGAGGCTGCGGCGTTCTGGGCGCTGTGACCTCTTCCAGAAGAAAG
Seq A exon
ACTACGTACGGACCTGCATCATGAACAATGGGGTTGGGTACCGGGGCACCATGGCCACGACCGTGGGTGGCCTGCCCTGCCAGGCTTGGAGCCACAAGTTCCCAAATGATCACAA
Seq C2 exon
GTACACGCCCACTCTCCGGAATGGCCTGGAAGAGAACTTCTGCCGTAACCCTGATGGCGACCCCGGAGGTCCTTGGTGCTACACAACAGACCCTGCTGTGCGCTTCCAGAGCTGCGGCATCAAATCCTGCCGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-'4-11,'4-9,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.079
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(95.0=97.4)
A:
PF0002421=PAN_1=PD(2.5=2.6),PF0005113=Kringle=PU(42.9=84.6)
C2:
PF0005113=Kringle=PD(55.8=91.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAACGTGAGCAGCCATG
R:
CCTCCCGGCAGGATTTGATG
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)