HsaEX0040354 @ hg38
Exon Skipping
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49687149-49687668:-
Coord C1 exon
chr3:49687556-49687668
Coord A exon
chr3:49687364-49687478
Coord C2 exon
chr3:49687149-49687285
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCTCTTGCTCCCAGACT
3' ss Score
9.44
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GGCCTTCCACTACAACGTGAGCAGCCATGGTTGCCAACTGCTGCCATGGACTCAACACTCGCCCCACACGAGGCTGCGGCGTTCTGGGCGCTGTGACCTCTTCCAGAAGAAAG
Seq A exon
ACTACGTACGGACCTGCATCATGAACAATGGGGTTGGGTACCGGGGCACCATGGCCACGACCGTGGGTGGCCTGCCCTGCCAGGCTTGGAGCCACAAGTTCCCAAATGATCACAA
Seq C2 exon
GTACACGCCCACTCTCCGGAATGGCCTGGAAGAGAACTTCTGCCGTAACCCTGATGGCGACCCCGGAGGTCCTTGGTGCTACACAACAGACCCTGCTGTGCGCTTCCAGAGCTGCGGCATCAAATCCTGCCGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-'6-9,'6-6,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.085
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=FE(41.8=100)
A:
PF0002421=PAN_1=PD(1.1=2.6),PF0005113=Kringle=PU(42.9=84.6)
C2:
PF0005113=Kringle=PD(55.8=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACAACGTGAGCAGCCATG
R:
CCTCCCGGCAGGATTTGATG
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development