MmuEX0029861 @ mm10
Exon Skipping
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108081385-108081919:+
Coord C1 exon
chr9:108081385-108081497
Coord A exon
chr9:108081584-108081680
Coord C2 exon
chr9:108081783-108081919
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCCATTGCTTCCAGATT
3' ss Score
9.19
5' ss Seq
CAGGTTCCC
5' ss Score
-1.5
Exon sequences
Seq C1 exon
GGCCTTCCACTACAACATGAGCAGCCATGGTTGCCAGCTGCTGCCGTGGACCCAGCACTCGCTGCACACACAGCTATACCACTCGAGTCTGTGCCATCTCTTCCAGAAGAAAG
Seq A exon
ATTATGTGCGGACCTGCATTATGGACAATGGGGTCAGCTACCGGGGCACTGTGGCCAGGACAGCTGGTGGCCTGCCCTGCCAAGCCTGGAGTCGCAG
Seq C2 exon
GTATACGCCCACGCCAAAGAATGGCCTGGAAGAGAACTTCTGTAGGAACCCTGATGGGGATCCCAGAGGTCCCTGGTGCTACACAACAAACCGCAGTGTGCGTTTCCAGAGCTGTGGCATCAAAACCTGCAGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591-'2-6,'2-5,3-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.128
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=FE(40.4=100)
A:
PF0002421=PAN_1=PD(1.1=2.6),PF0005113=Kringle=PU(42.9=84.6)
C2:
PF0005113=Kringle=PD(55.8=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCACTCGAGTCTGTGCCAT
R:
CTGCAGGTTTTGATGCCACAG
Band lengths:
169-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types