GgaEX1037245 @ galGal3
Exon Skipping
Gene
ENSGALG00000002722 | E1C8A1_CHICK
Description
NA
Coordinates
chr12:2306805-2307537:+
Coord C1 exon
chr12:2306805-2306917
Coord A exon
chr12:2306994-2307108
Coord C2 exon
chr12:2307401-2307537
Length
115 bp
Sequences
Splice sites
3' ss Seq
CGGTGCCGGGTGCTCCCCAGACT
3' ss Score
5.69
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGCCTTCCACCACGAGCGGCAGAGCCAGCTGTGCCAGCTGCTGCCCTGGAGCCAACGCTCGCCCGGCGCCCGGCTGCAGAAGAACATCCACTACGACCTGTACCAGAAGAAAG
Seq A exon
ACTTCCTGCGGGAGTGCATCGTGGCCAATGGCACCAGTTATCGTGGCACGCGGGACACGACGGAGCGTGGCCTGCGCTGCCAGCACTGGCAGGCCACCACGCCCCACGACCACAG
Seq C2 exon
ATTCCTGCCATCCCTCCGCAATGGGCTGGAGGAGAATTACTGCCGCAACCCCGACCGCGACAAGCGGGGCCCGTGGTGCTACACCGTTGACCCCAACGTCCGACACCAGAGCTGCGGCATCAAGAAGTGTGAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.205 C2=0.106
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=FE(46.3=100)
A:
PF0002421=PAN_1=PD(1.2=2.6),PF0005113=Kringle=PU(42.9=84.6)
C2:
PF0005113=Kringle=PD(55.8=91.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCACCACGAGCGGCAG
R:
CTCACACTTCTTGATGCCGCA
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]