RnoEX0056127 @ rn6
Exon Skipping
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116858634-116859155:+
Coord C1 exon
chr8:116858634-116858746
Coord A exon
chr8:116858825-116858939
Coord C2 exon
chr8:116859019-116859155
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCCATTGCCCCCCAGACT
3' ss Score
8.92
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
AGCCTTCCACTACAATATGAGCAGCCATGGTTGCCAGCTACTACCGTGGACTCAGCACTCTCTGCGTGCACAGCTACACCATTCTAGCCTGTGCGATCTCTTCCAGAAGAAAG
Seq A exon
ACTATGTACGGACCTGCATTATGGACAATGGGGCCAGCTACCGGGGCACTGTGGCCAGGACAGCTGATGGCTTGCCCTGCCAAGCCTGGAGCCGCAGGTTCCCCAATGACCACAA
Seq C2 exon
GTACACGCCCACACCGAAGAATGGCCTGGAAGAGAACTTCTGTCGGAACCCTGATGGGGACCCCAGAGGTCCCTGGTGCTACACGACAAACCGCAGCGTGCGTTTCCAGAGCTGCGGCATCAAATCATGCAGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.128
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=FE(40.4=100)
A:
PF0002421=PAN_1=PD(1.1=2.6),PF0005113=Kringle=PU(42.9=84.6)
C2:
PF0005113=Kringle=PD(55.8=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTACAATATGAGCAGCCA
R:
TCCCTGCATGATTTGATGCCG
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]